Research publications | Alfred Health

Risk mapping for COVID-19 outbreaks in Australia using mobility data

Zachreson, Cameron; Mitchell, Lewis; Lydeamore, Michael J.; Rebuli, Nicolas; Tomko, Martin; Geard, Nicholas

(2021), J R SOC INTERFACE, 18(174), 20200657

DOI: 10.1098/rsif.2020.0657

Epigenetic scars of CD8+ T cell exhaustion persist after cure of chronic infection in humans

Yates, Kathleen B.; Tonnerre, Pierre; Martin, Genevieve E.; Gerdemann, Ulrike; Al Abosy, Rose; Comstock, Dawn E.; Weiss, Sarah A.; Wolski, David; Tully, Damien C.; Chung, Raymond T.; Allen, Todd M.; Kim, Arthur Y.; Fidler, Sarah; Fox, Julie; Frater, John;

(2021), NAT IMMUNOL, 22(8), 1020-1029

DOI: 10.1038/s41590-021-00979-1

Recovery of small plasmid sequences via Oxford Nanopore sequencing

Wick, Ryan; Judd, Louise M.; Wyres, Kelly L.; Holt, Kathryn E.

(2021), MICROBIOL GENOMICS, 7(8), 631

DOI: 10.1099/mgen.0.000631

Trycycler: consensus long-read assemblies for bacterial genomes

Wick, Ryan R.; Judd, Louise M.; Cerdeira, Louise T.; Hawkey, Jane; Méric, Guillaume; Vezina, Ben; Wyres, Kelly L.; Holt, Kathryn E.

(2021), GENOME BIOL, 22(1), 266

DOI: 10.1186/s13059-021-02483-z

Landscape of human antibody recognition of the SARS-CoV-2 receptor binding domain

Wheatley, Adam K.; Pymm, Phillip; Esterbauer, Robyn; Dietrich, Melanie H.; Lee, Wen Shi; Drew, Damien; Kelly, Hannah G.; Chan, Li Jin; Mordant, Francesca L.; Black, Katrina A.; Adair, Amy; Tan, Hyon Xhi; Juno, Jennifer A.; Wragg, Kathleen M.; Amarasena, T

(2021), CELL REP, 37(2, 109822), 1-e11

DOI: 10.1016/j.celrep.2021.109822

The Impact of the COVID-19 Pandemic on People Living with HIV in Victoria, Australia

Weerasuria, Mihiri P.; Ko, Christy; Ehm, Adam; O'Bryan, Jessica; McMahon, James; Woolley, Ian; Hoy, Jennifer F.; Lau, Jillian S.Y.

(2021), AIDS RES HUM RETROV, 37(4), 322-328

DOI: 10.1089/aid.2021.0007

Hemagglutinin Functionalized Liposomal Vaccines Enhance Germinal Center and Follicular Helper T Cell Immunity

Vu, Mai N.; Kelly, Hannah G.; Tan, Hyon Xhi; Juno, Jennifer A.; Esterbauer, Robyn; Davis, Thomas P.; Truong, Nghia P.; Wheatley, Adam K.; Kent, Stephen J.

(2021), ADV HEALTHC MATER, 10(10), 2002142

DOI: 10.1002/adhm.202002142

Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae

Viehweger, Adrian; Blumenscheit, Christian; Lippmann, Norman; Wyres, Kelly L.; Brandt, Christian; Hans, Jörg B.; Hölzer, Martin; Irber, Luiz; Gatermann, Sören; Lübbert, Christoph; Pletz, Mathias W.; Holt, Kathryn E.; König, Brigitte

(2021), MICROBIOL GENOMICS, 7(12), 741

DOI: 10.1099/mgen.0.000741

Staphylococcus aureus Skin and Soft Tissue Infection Recurrence Rates in Outpatients

Vella, Venanzio; Galgani, Ilaria; Polito, Letizia; Arora, Ashwani Kumar; Creech, C. Buddy; David, Michael Z.; Lowy, Franklin D.; Macesic, Nenad; Ridgway, Jessica P.; Uhlemann, Anne Catrin; Bagnoli, Fabio

(2021), CLIN INFECT DIS, 73(5), E1045-E1053

DOI: 10.1093/cid/ciaa1717

Collateral Sensitivity to β-Lactam Drugs in Drug-Resistant Tuberculosis Is Driven by the Transcriptional Wiring of BlaI Operon Genes

Trigos, A. S.; Goudey, B. W.; Bedő, J.; Conway, T. C.; Faux, N. G.; Wyres, K. L.

(2021), MSPHERE, 6(3), e0024521

DOI: 10.1128/mSphere.00245-21

Pharmacodynamics of ceftazidime plus tobramycin combination dosage regimens against hypermutable Pseudomonas aeruginosa isolates at simulated epithelial lining fluid concentrations in a dynamic in vitro infection model

Tait, Jessica R.; Bilal, Hajira; Kim, Tae Hwan; Oh, Abigail; Peleg, Anton Y.; Boyce, John D.; Oliver, Antonio; Bergen, Phillip J.; Nation, Roger L.; Landersdorfer, Cornelia B.

(2021), J GLOB ANTIMICROB RE, 26, 55-63

DOI: 10.1016/j.jgar.2021.04.021

Population-based analysis of the epidemiological features of COVID-19 epidemics in Victoria, Australia, January 2020 – March 2021, and their suppression through comprehensive control strategies

Sullivan, Sheena G.; Brotherton, Julia M.L.; Lynch, Brigid M.; Cheung, Allison; Lydeamore, Michael; Stevenson, Mark; Firestone, Simon; Canevari, Jose; Nguyen, Huu Nghia Joey; Carville, Kylie S.; Clothier, Hazel J.; Goldsmith, Jessie; Tenneti, Naveen; Barn

(2021), Lancet Regional Health-Western Pacific, 17, 100297

DOI: 10.1016/j.lanwpc.2021.100297

Acceptability of Injectable Antiretroviral Therapy in Australian Travelers With HIV

Spring, Stephanie; O'Bryan, Jessica; McMahon, James; Woolley, Ian

(2021), JAIDS-J ACQ IMM DEF, 86(1), e13-e15

DOI: 10.1097/QAI.0000000000002501

Follow-up and Clinical Outcomes of Human Immunodeficiency Virus (HIV)-Exposed Infants in A Low-Prevalence Setting in A Multidisciplinary Model of Care in Australia

Shepherd, Kathryn; Giles, Michelle; Blyth, Karen; O'keeffe, Fiona; Bordun, Louise; Connell, Tom G.; Bryant, Penelope A.

(2021), J PEDIAT INF DIS SOC, 10(1), 14-21

DOI: 10.1093/jpids/piaa010

Genome-wide analysis provides a deeper understanding of the population structure of the Salmonella enterica serotype Paratyphi B complex in Bangladesh

Rahman, Sadia Isfat Ara; Taylor-Brown, Alyce; Khanam, Farhana; Khan, Ashraful Islam; Horesh, Gal; Dyson, Zoe A.; Begum, Yasmin Ara; Chowdhury, Emran Kabir; Qadri, Firdausi; Dougan, Gordon; Thomson, Nicholas R.

(2021), MICROBIOL GENOMICS, 7(9),

DOI: 10.1099/mgen.0.000617

Genetic diversity of Salmonella Paratyphi A isolated from enteric fever patients in Bangladesh from 2008 to 2018

Rahman, Sadia Isfat Ara; Nguyen, To Nguyen Thi; Khanam, Farhana; Thomson, Nicholas R.; Dyson, Zoe A.; Taylor-Brown, Alyce; Chowdhury, Emran Kabir; Dougan, Gordon; Baker, Stephen; Qadri, Firdausi

(2021), PLOS NEGLECT TROP D, 15(10), e0009748

DOI: 10.1371/journal.pntd.0009748

A survey of current resources to study lncrna-protein interactions

Philip, Melcy; Chen, Tyrone; Tyagi, Sonika

(2021), Non-coding RNA, 7(2), 33

DOI: 10.3390/ncrna7020033

Gender Differences in Healthy Lifestyle Adherence Following Percutaneous Coronary Intervention for Coronary Artery Disease

Perera, Sheneli; Aslam, Anum; Stehli, Julia; Kaye, David; Layland, Jamie; Nicholls, Stephen J.; Cameron, James; Zaman, Sarah

(2021), HEART LUNG CIRC, 30(1), E37-E40

DOI: 10.1016/j.hlc.2020.06.024

Randomised controlled trials of alcohol-based surgical site skin preparation for the prevention of surgical site infections

Peel, Trisha N.; Watson, Eliza; Lee, Sue J.

(2021), J CLIN MED, 10(4), 663

DOI: 10.3390/jcm10040663

Antibiotic-chemoattractants enhance neutrophil clearance of Staphylococcus aureus

Payne, Jennifer A.E.; Tailhades, Julien; Ellett, Felix; Kostoulias, Xenia; Fulcher, Alex J.; Fu, Ting; Leung, Ryan; Louch, Stephanie; Tran, Amy; Weber, Severin A.; Schittenhelm, Ralf B.; Lieschke, Graham J.; Qin, Chengxue Helena; Irima, Daniel; Peleg, Ant

(2021), NAT COMMUN, 12(1), 6157

DOI: 10.1038/s41467-021-26244-5