Research publications | Alfred Health

HIV is associated with an increased risk of age-related clonal hematopoiesis among older adults

Dharan, Nila J.; Yeh, Paul; Bloch, Mark; Yeung, Miriam M.; Baker, David; Guinto, Jerick; Roth, Norman; Ftouni, Sarah; Ognenovska, Katherine; Smith, Don; Hoy, Jennifer F.; Woolley, Ian; Pell, Catherine; Templeton, David J.; Fraser, Neil; Rose, Nectarios; H

(2021), NAT MED, 27(6), 1006-1011

DOI: 10.1038/s41591-021-01357-y

wMel Wolbachia genome remains stable after 7 years in Australian Aedes aegypti field populations

Dainty, Kimberley R.; Hawkey, Jane; Judd, Louise M.; Pacidônio, Etiene C.; Duyvestyn, Johanna M.; Gonçalves, Daniela S.; Lin, Silk Yu; O'Donnell, Tanya B.; O'Neill, Scott L.; Simmons, Cameron P.; Holt, Kathryn E.; Flores, Heather A.

(2021), MICROBIOL GENOMICS, 7(9), 641

DOI: 10.1099/mgen.0.000641

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

Colquhoun, Rachel M.; Hall, Michael B.; Lima, Leandro; Roberts, Leah W.; Malone, Kerri M.; Hunt, Martin; Letcher, Brice; Hawkey, Jane; George, Sophie; Pankhurst, Louise; Iqbal, Zamin

(2021), GENOME BIOL, 22(1), 267

DOI: 10.1186/s13059-021-02473-1

A multi-modal data harmonisation approach for discovery of COVID-19 drug targets

Chen, Tyrone; Philip, Melcy; Cao, Kim Anh Lê; Tyagi, Sonika

(2021), BRIEF BIOINFORM, 22(6,, bbab185

DOI: 10.1093/bib/bbab185

multiomics: A user-friendly multi-omics data harmonisation R pipeline

Chen, Tyrone Chink Chien; Abadi, Al J.; Cao, Kim Anh Lê; Tyagi, Sonika

(2021), F1000Research, 10, 538

DOI: 10.12688/f1000research.53453.1

Consensus guidelines for optimising antifungal drug delivery and monitoring to avoid toxicity and improve outcomes in patients with haematological malignancy and haemopoietic stem cell transplant recipients, 2021

Chau, Maggie M.; Daveson, Kathryn; Alffenaar, Jan Willem C.; Gwee, Amanda; Ho, Su Ann; Marriott, Deborah J.E.; Trubiano, Jason A.; Zhao, Jessie; Roberts, Jason A.; Chang, Christina C.; Blyth, Christopher C.; Chen, Sharon C.A.; Khanina, Anna; Morrissey, C.

(2021), INTERN MED J, 51(S7), 37-66

DOI: 10.1111/imj.15587

Introduction to the updated Australasian consensus guidelines for the management of invasive fungal disease and use of antifungal agents in the haematology/oncology setting, 2021

Chang, Christina C.; Blyth, Christopher C.; Chen, Sharon C.A.; Khanina, Anna; Morrissey, C. Orla; Roberts, Jason A.; Thursky, Karin A.; Worth, Leon J.; Slavin, Monica A.; ,

(2021), INTERN MED J, 51(S7), 3-17

DOI: 10.1111/imj.15585

A novel hypermucoviscous Klebsiella pneumoniae ST3994-K2 clone belonging to Clonal Group 86

Cerdeira, Louise; Nakamura-Silva, Rafael; Oliveira-Silva, Mariana; Sano, Elder; Esposito, Fernanda; Fuga, Bruna; Moura, Quézia; Miranda, Carlos Eduardo Saraiva; Wyres, Kelly; Lincopan, Nilton; Pitondo-Silva, André

(2021), PATHOG DIS, 79(8), ftab047

DOI: 10.1093/femspd/ftab047

Spontaneous Emergence of Azithromycin Resistance in Independent Lineages of Salmonella Typhi in Northern India

Carey, Megan E.; Jain, Ruby; Yousuf, Mohammad; Maes, Mailis; Dyson, Zoe A.; Thu, Trang Nguyen Hoang; Nguyen Thi Nguyen, To; Ho Ngoc Dan, Thanh; Nhu Pham Nguyen, Quynh; Mahindroo, Jaspreet; Thanh Pham, Duy; Sandha, Kawaljeet Singh; Baker, Stephen; Taneja,

(2021), CLIN INFECT DIS, 72(5), e120-e127

DOI: 10.1093/cid/ciaa1773

Incidence of dyslipidemia in people with HIV who are treated with integrase inhibitors versus other antiretroviral agents

Byonanebye, Dathan M.; Polizzotto, Mark N.; Begovac, Josip; Grabmeier-Pfistershammer, Katharina; Abela, Irene; Castagna, Antonella; de Wit, Stéphane; Mussini, Cristina; Vehreschild, Jörg J.; d'Arminio Monforte, Antonella; Wit, Ferdinand W.N.M.; Pradier, C

(2021), AIDS, 35(6), 869-882

DOI: 10.1097/QAD.0000000000002811

IgG4-related disease masquerading as a fungating groin lesion in a patient with HIV and incomplete immune reconstitution

Butel-Simoes, Grace; Woolley, Ian; McMahon, James; Yeo, Ai Li

(2021), AIDS, 35(4), 706-707

DOI: 10.1097/QAD.0000000000002801

Approaches for the inhibition and elimination of microbial biofilms using macromolecular agents

Blackman, Lewis D.; Qu, Yue; Cass, Peter; Locock, Katherine E.S.

(2021), CHEM SOC REV, 50(3), 1587-1616

DOI: 10.1039/d0cs00986e

The resistance to host antimicrobial peptides in infections caused by daptomycin-resistant staphylococcus aureus

Bhuiyan, Md Saruar; Jiang, Jhih-Hang; Kostoulias, Xenia; Theegala, Ravali; Lieschke, Graham J.; Peleg, Anton Y.

(2021), ANTIBIOTICS-BASEL, 10(2), 96

DOI: 10.3390/antibiotics10020096

Coformulation with tattoo ink for immunological assessment of vaccine immunogenicity in the draining lymph node

Barber-Axthelm, Isaac M.; Kelly, Hannah G.; Esterbauer, Robyn; Wragg, Kathleen M.; Gibbon, Anne M.; Lee, Wen Shi; Wheatley, Adam K.; Kent, Stephen J.; Tan, Hyon Xhi; Juno, Jennifer A.

(2021), J IMMUNOL, 207(2), 735-744

DOI: 10.4049/jimmunol.2001299

Contemporary antiretrovirals and body-mass index

Bansi-Matharu, Loveleen; Phillips, Andrew; Oprea, Cristiana; Grabmeier-Pfistershammer, Katharina; Günthard, Huldrych F.; De Wit, Stephane; Guaraldi, Giovanni; Vehreschild, Jorg J.; Wit, Ferdinand; Law, Matthew; Wasmuth, Jan Christian; Chkhartishvili, Niko

(2021), LANCET HIV, 8(11), e711-e722

DOI: 10.1016/S2352-3018(21)00163-6

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch

Argimón, Silvia; Yeats, Corin A.; Goater, Richard J.; Abudahab, Khalil; Taylor, Benjamin; Underwood, Anthony; Sánchez-Busó, Leonor; Wong, Vanessa K.; Dyson, Zoe A.; Nair, Satheesh; Park, Se Eun; Marks, Florian; Page, Andrew J.; Keane, Jacqueline A.; Baker

(2021), NAT COMMUN, 12(1), 2879

DOI: 10.1038/s41467-021-23091-2

Antimicrobial pharmacokinetics and preclinical in vitro models to support optimized treatment approaches for uncomplicated lower urinary tract infections

Abbott, Iain J.; Roberts, Jason A.; Meletiadis, Joseph; Peleg, Anton Y.

(2021), EXPERT REV ANTI-INFE, 19(3), 271-295

DOI: 10.1080/14787210.2020.1813567

Pharmacokinetic/pharmacodynamic analysis of oral fosfomycin against Enterobacterales, Pseudomonas aeruginosa and Enterococcus spp. In an in vitro bladder infection model

Abbott, Iain J.; Mouton, Johan W.; Peleg, Anton Y.; Meletiadis, Joseph

(2021), J ANTIMICROB CHEMOTH, 76(12), 3201-3211

DOI: 10.1093/jac/dkab313

Assessing the feasibility, acceptability and impacts of an education program on hepatitis B testing uptake among ethnic Chinese in Australia: results of a randomised controlled pilot study.

Xiao Y, Wallace J, Ahad M, van Gemert C, Thompson AJ, Doyle J, Lam HY, Chan K, Bennett G, Adamson E, Yussf N, Tang A, Pedrana A, Stoove M, Hellard M, Howell J

(2021), BMC PUBLIC HEALTH, 21(1), 1861

DOI: 10.1186/s12889-021-11916-0

"It's time!": A qualitative exploration of the acceptability of hepatitis C notification systems to help eliminate hepatitis C.

Walker S, Wallace J, Latham N, Saich F, Pedrana A, Hellard M, Treloar C, Marukutira T, Higgs P, Doyle J, Stoové M

(2021), Int J Drug Policy, 97, 103280

DOI: 10.1016/j.drugpo.2021.103280