Research publications

Alfred Health research outcomes are published in a wide range of peer reviewed journals. 

Search or browse research publications by year, research area, publication type or keyword.

Clear filter
Publication Details
West Nile virus transfusion-transmission risk in Australia associated with a seasonal outbreak in the United States

Kiely, P, Seed, C R, Gambhir, M, Cheng, A C, McQuilten, Z K, Wood, E M

(2022), TRANSFUSION, 11, 2291-2296

DOI: 101111/trf17094

Surveillance for severe influenza and COVID-19 in patients admitted to sentinel Australian hospitals in 2020: the Influenza Complications Alert Network (FluCAN)

Begum, H, Dwyer, D E, Holmes, M, Irving, L, Simpson, G, Senenayake, S, Korman, T, Friedman, N D, Cooley, L, Wark, P, Bowler, S, Kok, J, Upham, J, Fatovich, D M, Waterer, G, Macartney, K, Blyth, C C, Crawford, N, Buttery, J, Marshall

(2022), Communicable Diseases Intelligence, 46,

DOI: 1033321/cdi20224613

Patterns of multidrug resistant organism acquisition in an adult specialist burns service: a retrospective review

Cleland, H, Tracy, L M, Padiglione, A, Stewardson, A J

(2022), ANTIMICROB RESIST IN, 1,

DOI: 101186/s13756-022-01123-w

Influenza epidemiology in patients admitted to sentinel Australian hospitals in 2019: the Influenza Complications Alert Network (FluCAN)

Cheng, A C, Dwyer, D E, Holmes, M, Irving, L, Simpson, G, Senenayake, S, Korman, T, Friedman, N D, Cooley, L, Wark, P, Holwell, A, Bowler, S, Upham, J, Fatovich, D M, Waterer, G, Blyth, C C, Crawford, N, Buttery, J, Marshall, H S,

(2022), Communicable Diseases Intelligence, 46,

DOI: 1033321/cdi20224614

Experiences of personal protective equipment by Australian healthcare workers during the COVID-19 pandemic, 2020

Ayton, D, Soh, S E, Berkovic, D, Parker, C, Yu, K, Honeyman, D, Manocha, R, MacIntyre, R, Ananda-Rajah, M

(2022), PLOS ONE, 6,

DOI: 101371/journalpone0269484

Implementation of an antimicrobial stewardship program in the Australian private hospital system

Ayton, D, Watson, E, Betts, J M, Doyle, J, Teh, B, Valoppi, G, Cotta, M, Robertson, M, Peel, T

(2022), BMC HEALTH SERV RES, 1,

DOI: 101186/s12913-022-08938-8

Female sex and advanced age are associated with invasive cytomegalovirus disease in solid organ transplant recipients

Perry, Whitney A; Gardiner, Bradley J; Price, Lori Lyn; Rodriguez-Garcia, Marta; Chow, Jennifer K; Snydman, David R

(2022), TRANSPL INFECT DIS, 24(6), e13960

DOI: 101111/tid13960

Physical function limitation among gay and bisexual men aged =55 years with and without HIV

Boettiger, David C; Huque, Md Hamidul; Bloch, Mark; Woolley, Ian; Templeton, David J; Law, Matthew G; Fraser, Neil; Hoy, Jennifer; Petoumenos, Kathy

(2022), SEX HEALTH, 19(6), 533-545

DOI: 101071/SH22085

Multiplex PCR assay to detect high risk lineages of Salmonella Typhi and Paratyphi A

Khokhar, Fahad; Pickard, Derek; Dyson, Zoe; Iqbal, Junaid; Pragasam, Agila; John, Jobin Jacob; Veeraraghavan, Balaji; Qamar, Farah; Dougan, Gordon; MacQueen, Hilary; Rigas, Sushila; Holmes, Mark; Mutreja, Ankur

(2022), PLOS ONE, 17(7), e0267805

DOI: 101371/journalpone0267805

Whole genome sequence analysis of Salmonella Typhi provides evidence of phylogenetic linkage between cases of typhoid fever in Santiago, Chile in the 1980s and 2010–2016

Maes, Mailis; Sikorski, Michael J; Carey, Megan E; Higginson, Ellen E; Dyson, Zoe A; Fernandez, Alda; Araya, Pamela; Tennant, Sharon M; Baker, Stephen; Lagos, Rosanna; Hormazábal, Juan Carlos; Levine, Myron M; Dougan, Gordon

(2022), PLOS NEGLECT TROP D, 16(6), e0010178

DOI: 101371/JOURNALPNTD0010178

Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 217 sensitive to antimicrobials

Dyson, Zoe Anne; Malau, Elisheba; Horwood, Paul F; Ford, Rebecca; Siba, Valentine; Yoannes, Mition; Pomat, William; Passey, Megan; Judd, Louise M; Ingle, Danielle J; Williamson, Deborah A; Dougan, Gordon; Greenhill, Andrew R; Holt, Kathryn E

(2022), PLOS NEGLECT TROP D, 16(3), e0010306

DOI: 101371/journalpntd0010306

Distinct increase in antimicrobial resistance genes among Escherichia coli during 50 years of antimicrobial use in livestock production in China

Yang, Lu; Shen, Yingbo; Jiang, Junyao; Wang, Xueyang; Shao, Dongyan; Lam, Margaret MC; Holt, Kathryn E; Shao, Bing; Wu, Congming; Shen, Jianzhong; Walsh, Timothy R; Schwarz, Stefan; Wang, Yang; Shen, Zhangqi

(2022), NAT FOOD, 3(3), 197-205

DOI: 101038/s43016-022-00470-6

A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China

Qiu, Shaofu; Liu, Kangkang; Yang, Chaojie; Xiang, Ying; Min, Kaiyuan; Zhu, Kunpeng; Liu, Hongbo; Du, Xinying; Yang, Mingjuan; Wang, Ligui; Sun, Yong; Zhou, Haijian; Mahe, Muti; Zhao, Jiayong; Li, Shijun; Yu, Deshan; Hawkey, Jane; Holt, Kathryn E; Baker,

(2022), NAT COMMUN, 13(1), 7365

DOI: 101038/s41467-022-35136-1

Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity

Tanmoy, Arif M; Hooda, Yogesh; Sajib, Mohammad SI; da Silva, Kesia E; Iqbal, Junaid; Qamar, Farah N; Luby, Stephen P; Dougan, Gordon; Dyson, Zoe A; Baker, Stephen; Garrett, Denise O; Andrews, Jason R; Saha, Samir K; Saha, Senjuti

(2022), NAT COMMUN, 13(1), 7912

DOI: 101038/s41467-022-35587-6

SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity

Zhang, Wuji; Chua, Brendon Y; Selva, Kevin J; Kedzierski, Lukasz; Ashhurst, Thomas M; Haycroft, Ebene R; Shoffner-Beck, Suzanne K; Hensen, Luca; Boyd, David F; James, Fiona; Mouhtouris, Effie; Kwong, Jason C; Chua, Kyra YL; Drewett, George; Copae

(2022), NAT COMMUN, 13(1), 2774

DOI: 101038/s41467-022-30088-y

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Judd, Louise M; Lam, Margaret MC; Gomi, Ryota; Abbott, Iain J; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; Hunter, Peter C; Pilcher, David V;

(2022), NAT COMMUN, 13(1), 3017

DOI: 101038/s41467-022-30717-6

Transcriptomic analysis reveals myometrial topologically associated domains linked to the onset of human term labour

Tyagi, Sonika; Chan, Eng Cheng; Barker, Daniel; McElduff, Patrick; Taylor, Kelly A; Riveros, Carlos; Singh, Esha; Smith, Roger

(2022), MOL HUM REPROD, 28(3), gaac003

DOI: 101093/molehr/gaac003

Kaptive 20: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex

Lam, Margaret MC; Wick, Ryan R; Judd, Louise M; Holt, Kathryn E; Wyres, Kelly L

(2022), MICROB GENOMICS, 8(3), 800

DOI: 101099/mgen0000800

Linear plasmids in Klebsiella and other Enterobacteriaceae

Hawkey, Jane; Cottingham, Hugh; Tokolyi, Alex; Wick, Ryan R; Judd, Louise M; Cerdeira, Louise; de Oliveira Garcia, Doroti; Wyres, Kelly L; Holt, Kathryn E

(2022), MICROB GENOMICS, 8(4),

DOI: 101099/mgen0000807

Genomic epidemiology and temperature dependency of hypermucoviscous Klebsiella pneumoniae in Japan

Le, Mi Nguyen Tra; Kayama, Shizuo; Wyres, Kelly L; Yu, Liansheng; Hisatsune, Junzo; Suzuki, Masato; Yahara, Koji; Terachi, Tsuneko; Sawa, Kana; Takahashi, Shin; Okuhara, Toshihiko; Kohama, Kunihiko; Holt, Kathryn E; Mizutani, Tetsu; Ohge, Hiroki; Sugai,

(2022), MICROB GENOMICS, 8(5), 827

DOI: 101099/mgen0000827

1 2 3